J4_6BU8_001

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6BU8|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BU8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1948

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6BU8|1|01|C|268
6BU8|1|01|C|269
*
6BU8|1|01|G|370
6BU8|1|01|A|371
6BU8|1|01|G|372
6BU8|1|01|U|373
6BU8|1|01|A|374
6BU8|1|01|G|375
*
6BU8|1|01|U|399
6BU8|1|01|G|400
6BU8|1|01|A|401
6BU8|1|01|A|402
6BU8|1|01|U|403
6BU8|1|01|A|404
6BU8|1|01|U|405
6BU8|1|01|G|406
*
6BU8|1|01|C|421
6BU8|1|01|A|422
6BU8|1|01|A|423
6BU8|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28