3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
6BU8|1|01|G|1271, 6BU8|1|01|A|1272, 6BU8|1|01|U|1273, 6BU8|1|01|A|1275, 6BU8|1|01|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6BU8_003 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1605
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6BU8|1|01|C|1270
6BU8|1|01|G|1271
6BU8|1|01|A|1272
6BU8|1|01|U|1273
6BU8|1|01|A|1274
6BU8|1|01|A|1275
6BU8|1|01|A|1276
*
6BU8|1|01|U|1294
6BU8|1|01|C|1295
*
6BU8|1|01|G|1645
6BU8|1|01|C|1646
6BU8|1|01|U|1647
6BU8|1|01|U|1648
*
6BU8|1|01|A|2009
6BU8|1|01|G|2010

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 16
50S ribosomal protein L17
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32

Coloring options:


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