J4_6BU8_005

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6BU8|1|01|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BU8_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1152

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6BU8|1|01|U|1313
6BU8|1|01|C|1314
*
6BU8|1|01|G|1338
6BU8|1|01|G|1339
6BU8|1|01|U|1340
6BU8|1|01|G|1341
6BU8|1|01|A|1342
6BU8|1|01|G|1343
*
6BU8|1|01|C|1404
6BU8|1|01|U|1405
*
6BU8|1|01|A|1597
6BU8|1|01|A|1598
6BU8|1|01|U|1599
6BU8|1|01|C|1600
6BU8|1|01|G|1601
6BU8|1|01|U|1602
6BU8|1|01|A|1603

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23

Chain 32

50S ribosomal protein L34