J4_6BU8_012

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6BU8|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BU8_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1791

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BU8|1|A|G|142
6BU8|1|A|A|143
6BU8|1|A|G|144
*
6BU8|1|A|C|178
6BU8|1|A|A|179
6BU8|1|A|U|180
6BU8|1|A|A|181
6BU8|1|A|A|182
6BU8|1|A|C|183
6BU8|1|A|G|184
*
6BU8|1|A|C|193
6BU8|1|A|C|194
6BU8|1|A|A|195
6BU8|1|A|A|196
6BU8|1|A|A|197
6BU8|1|A|G|198
*
6BU8|1|A|U|219
6BU8|1|A|G|220
6BU8|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20