J4_6BUW_001

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6BUW|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BUW_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0695

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6BUW|1|QA|G|115
6BUW|1|QA|A|116
6BUW|1|QA|G|117
6BUW|1|QA|U|118
6BUW|1|QA|A|119
6BUW|1|QA|A|120
6BUW|1|QA|C|121
6BUW|1|QA|G|122
*
6BUW|1|QA|U|239
6BUW|1|QA|C|240
*
6BUW|1|QA|G|286
6BUW|1|QA|U|287
6BUW|1|QA|A|288
6BUW|1|QA|G|289
*
6BUW|1|QA|C|311
6BUW|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17