J4_6BUW_018
3D structure
- PDB id
- 6BUW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6BUW|1|XV|U|8, 6BUW|1|XV|U|48, 6BUW|1|XV|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BUW_018 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.1504
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6BUW|1|XV|G|7
6BUW|1|XV|U|8
6BUW|1|XV|G|9
6BUW|1|XV|G|10
*
6BUW|1|XV|C|26
6BUW|1|XV|G|27
6BUW|1|XV|U|28
*
6BUW|1|XV|A|44
6BUW|1|XV|A|45
6BUW|1|XV|G|46
6BUW|1|XV|G|47
6BUW|1|XV|U|48
6BUW|1|XV|C|49
6BUW|1|XV|G|50
*
6BUW|1|XV|C|66
6BUW|1|XV|C|67
Current chains
- Chain XV
- P-site tRNA fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
Coloring options: