J4_6BY1_002

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGGAGGG*CGCAUAACG*CCAAAGAG*CUUGCCA

Length

31 nucleotides

Bulged bases

6BY1|1|AA|C|183, 6BY1|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BY1|1|AA|U|140
6BY1|1|AA|G|141
6BY1|1|AA|G|142
6BY1|1|AA|A|143
6BY1|1|AA|G|144
6BY1|1|AA|G|145
6BY1|1|AA|G|146
*
6BY1|1|AA|C|176
6BY1|1|AA|G|177
6BY1|1|AA|C|178
6BY1|1|AA|A|179
6BY1|1|AA|U|180
6BY1|1|AA|A|181
6BY1|1|AA|A|182
6BY1|1|AA|C|183
6BY1|1|AA|G|184
*
6BY1|1|AA|C|193
6BY1|1|AA|C|194
6BY1|1|AA|A|195
6BY1|1|AA|A|196
6BY1|1|AA|A|197
6BY1|1|AA|G|198
6BY1|1|AA|A|199
6BY1|1|AA|G|200
*
6BY1|1|AA|C|217
6BY1|1|AA|U|218
6BY1|1|AA|U|219
6BY1|1|AA|G|220
6BY1|1|AA|C|221
6BY1|1|AA|C|222
6BY1|1|AA|A|223

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20