J4_6BY1_005
3D structure
- PDB id
- 6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pH03H9 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.94 Å
Loop
- Sequence
- UUAG*CAC*GGGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 6BY1|1|AW|U|8, 6BY1|1|AW|U|47, 6BY1|1|AW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BY1_005 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.2599
- The information below is about J4_7MRL_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6BY1|1|AW|U|7
6BY1|1|AW|U|8
6BY1|1|AW|A|9
6BY1|1|AW|G|10
*
6BY1|1|AW|C|25
6BY1|1|AW|A|26
6BY1|1|AW|C|27
*
6BY1|1|AW|G|43
6BY1|1|AW|G|44
6BY1|1|AW|G|45
6BY1|1|AW|G|46
6BY1|1|AW|U|47
6BY1|1|AW|C|48
6BY1|1|AW|G|49
*
6BY1|1|AW|C|65
6BY1|1|AW|A|66
Current chains
- Chain AW
- Valine-specific transfer RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain AV
- Transfer RNA; tRNA
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CM
- 50S ribosomal protein L16
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