J4_6BY1_025

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6BY1|1|DA|U|653, 6BY1|1|DA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BY1_025 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1659

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6BY1|1|DA|C|601
6BY1|1|DA|A|602
6BY1|1|DA|A|603
6BY1|1|DA|G|604
*
6BY1|1|DA|C|624
6BY1|1|DA|G|625
6BY1|1|DA|A|626
6BY1|1|DA|A|627
6BY1|1|DA|G|628
*
6BY1|1|DA|C|635
6BY1|1|DA|G|636
6BY1|1|DA|A|637
6BY1|1|DA|G|638
*
6BY1|1|DA|C|650
6BY1|1|DA|G|651
6BY1|1|DA|U|652
6BY1|1|DA|U|653
6BY1|1|DA|A|654
6BY1|1|DA|A|655
6BY1|1|DA|G|656

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15