J4_6BY1_027

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6BY1|1|DA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BY1_027 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1263

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6BY1|1|DA|G|1310
6BY1|1|DA|G|1311
6BY1|1|DA|U|1312
6BY1|1|DA|U|1313
6BY1|1|DA|C|1314
*
6BY1|1|DA|G|1338
6BY1|1|DA|G|1339
6BY1|1|DA|U|1340
6BY1|1|DA|G|1341
6BY1|1|DA|A|1342
6BY1|1|DA|G|1343
*
6BY1|1|DA|C|1404
6BY1|1|DA|U|1405
*
6BY1|1|DA|A|1597
6BY1|1|DA|A|1598
6BY1|1|DA|U|1599
6BY1|1|DA|C|1600
6BY1|1|DA|G|1601
6BY1|1|DA|U|1602
6BY1|1|DA|A|1603
6BY1|1|DA|C|1604

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23