J4_6BY1_031

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6BY1|1|DA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BY1_031 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1501

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6BY1|1|DA|C|1833
6BY1|1|DA|U|1834
6BY1|1|DA|G|1835
*
6BY1|1|DA|C|1905
6BY1|1|DA|G|1906
*
6BY1|1|DA|C|1924
6BY1|1|DA|C|1925
6BY1|1|DA|U|1926
6BY1|1|DA|A|1927
6BY1|1|DA|A|1928
6BY1|1|DA|G|1929
6BY1|1|DA|G|1930
6BY1|1|DA|U|1931
6BY1|1|DA|A|1932
6BY1|1|DA|G|1933
*
6BY1|1|DA|C|1967
6BY1|1|DA|G|1968
6BY1|1|DA|A|1969
6BY1|1|DA|A|1970
6BY1|1|DA|U|1971
6BY1|1|DA|G|1972

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BW

Transfer RNA; tRNA

Chain DC

50S ribosomal protein L2