3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
6BZ6|1|QA|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6BZ6_001 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0728
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6BZ6|1|QA|G|115
6BZ6|1|QA|A|116
6BZ6|1|QA|G|117
6BZ6|1|QA|U|118
6BZ6|1|QA|A|119
6BZ6|1|QA|A|120
6BZ6|1|QA|C|121
6BZ6|1|QA|G|122
*
6BZ6|1|QA|U|239
6BZ6|1|QA|C|240
*
6BZ6|1|QA|G|286
6BZ6|1|QA|U|287
6BZ6|1|QA|A|288
6BZ6|1|QA|G|289
*
6BZ6|1|QA|C|311
6BZ6|1|QA|C|312

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QP
30S ribosomal protein S16
Chain QQ
30S ribosomal protein S17

Coloring options:


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