J4_6BZ6_005

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6BZ6|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BZ6_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1097

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6BZ6|1|RA|C|268
6BZ6|1|RA|U|269
*
6BZ6|1|RA|G|370
6BZ6|1|RA|A|371
6BZ6|1|RA|G|372
6BZ6|1|RA|U|373
6BZ6|1|RA|A|374
6BZ6|1|RA|C|375
*
6BZ6|1|RA|G|399
6BZ6|1|RA|G|400
6BZ6|1|RA|A|401
6BZ6|1|RA|A|402
6BZ6|1|RA|U|403
6BZ6|1|RA|C|404
6BZ6|1|RA|U|405
6BZ6|1|RA|G|406
*
6BZ6|1|RA|U|421
6BZ6|1|RA|A|422
6BZ6|1|RA|A|423
6BZ6|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9