J4_6BZ6_008

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6BZ6|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BZ6_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0886

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6BZ6|1|RA|G|1310
6BZ6|1|RA|G|1311
6BZ6|1|RA|U|1312
6BZ6|1|RA|U|1313
6BZ6|1|RA|C|1314
*
6BZ6|1|RA|G|1338
6BZ6|1|RA|G|1339
6BZ6|1|RA|U|1340
6BZ6|1|RA|U|1341
6BZ6|1|RA|A|1342
6BZ6|1|RA|G|1343
*
6BZ6|1|RA|C|1404
6BZ6|1|RA|U|1405
*
6BZ6|1|RA|A|1597
6BZ6|1|RA|C|1598
6BZ6|1|RA|C|1599
6BZ6|1|RA|C|1600
6BZ6|1|RA|G|1601
6BZ6|1|RA|U|1602
6BZ6|1|RA|A|1603
6BZ6|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23