J4_6BZ6_010

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6BZ6|1|RA|A|1444|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BZ6_010 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.3425

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6BZ6|1|RA|G|1444
6BZ6|1|RA|A|1444|||A
6BZ6|1|RA|C|1445
*
6BZ6|1|RA|G|1466
6BZ6|1|RA|C|1467
*
6BZ6|1|RA|G|1525
6BZ6|1|RA|G|1526
*
6BZ6|1|RA|C|1546
6BZ6|1|RA|C|1547

Current chains

Chain RA

23S rRNA

Nearby chains