J4_6BZ8_020

3D structure

PDB id

6BZ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

6BZ8|1|XW|U|8, 6BZ8|1|XW|G|46, 6BZ8|1|XW|U|48, 6BZ8|1|XW|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BZ8_020 not in the Motif Atlas

Homologous match to J4_2CSX_001

Geometric discrepancy: 0.573

The information below is about J4_2CSX_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6BZ8|1|XW|G|7
6BZ8|1|XW|U|8
6BZ8|1|XW|G|9
6BZ8|1|XW|G|10
*
6BZ8|1|XW|C|26
6BZ8|1|XW|G|27
6BZ8|1|XW|U|28
*
6BZ8|1|XW|A|44
6BZ8|1|XW|A|45
6BZ8|1|XW|G|46
6BZ8|1|XW|G|47
6BZ8|1|XW|U|48
6BZ8|1|XW|C|49
6BZ8|1|XW|G|50
*
6BZ8|1|XW|C|66
6BZ8|1|XW|C|67

Current chains

Chain XW

tRNA fMet

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XK

30S ribosomal protein S11

Chain Y6

50S ribosomal protein L33