J4_6C0F_001
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 6C0F|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6C0F_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1555
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6C0F|1|1|U|112
6C0F|1|1|C|113
*
6C0F|1|1|G|267
6C0F|1|1|A|268
6C0F|1|1|G|269
6C0F|1|1|U|270
6C0F|1|1|C|271
6C0F|1|1|G|272
*
6C0F|1|1|C|293
6C0F|1|1|U|294
6C0F|1|1|A|295
6C0F|1|1|A|296
6C0F|1|1|G|297
6C0F|1|1|U|298
6C0F|1|1|G|299
*
6C0F|1|1|U|316
6C0F|1|1|A|317
6C0F|1|1|A|318
6C0F|1|1|A|319
Current chains
- Chain 1
- Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain b
- Ribosome biogenesis protein BRX1
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain p
- ATP-dependent RNA helicase HAS1
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