J4_6C4I_001

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6C4I|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C4I_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1123

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|C|268
6C4I|1|A|C|269
*
6C4I|1|A|G|370
6C4I|1|A|A|371
6C4I|1|A|G|372
6C4I|1|A|U|373
6C4I|1|A|A|374
6C4I|1|A|G|375
*
6C4I|1|A|U|399
6C4I|1|A|G|400
6C4I|1|A|A|401
6C4I|1|A|A|402
6C4I|1|A|U|403
6C4I|1|A|A|404
6C4I|1|A|U|405
6C4I|1|A|G|406
*
6C4I|1|A|C|421
6C4I|1|A|A|422
6C4I|1|A|A|423
6C4I|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28