J4_6C4I_004
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6C4I|1|A|G|1271, 6C4I|1|A|A|1272, 6C4I|1|A|U|1273, 6C4I|1|A|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6C4I_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0663
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6C4I|1|A|C|1270
6C4I|1|A|G|1271
6C4I|1|A|A|1272
6C4I|1|A|U|1273
6C4I|1|A|A|1274
6C4I|1|A|A|1275
6C4I|1|A|A|1276
*
6C4I|1|A|U|1294
6C4I|1|A|C|1295
*
6C4I|1|A|G|1645
6C4I|1|A|C|1646
6C4I|1|A|U|1647
6C4I|1|A|U|1648
*
6C4I|1|A|A|2009
6C4I|1|A|G|2010
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain O
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L22
Coloring options: