J4_6C4I_006

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6C4I|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C4I_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0732

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6C4I|1|A|U|1313
6C4I|1|A|C|1314
*
6C4I|1|A|G|1338
6C4I|1|A|G|1339
6C4I|1|A|U|1340
6C4I|1|A|G|1341
6C4I|1|A|A|1342
6C4I|1|A|G|1343
*
6C4I|1|A|C|1404
6C4I|1|A|U|1405
*
6C4I|1|A|A|1597
6C4I|1|A|A|1598
6C4I|1|A|U|1599
6C4I|1|A|C|1600
6C4I|1|A|G|1601
6C4I|1|A|U|1602
6C4I|1|A|A|1603

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23