J4_6C5L_006

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6C5L|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C5L_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1661

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|BA|C|268
6C5L|1|BA|U|269
*
6C5L|1|BA|G|370
6C5L|1|BA|A|371
6C5L|1|BA|G|372
6C5L|1|BA|U|373
6C5L|1|BA|A|374
6C5L|1|BA|C|375
*
6C5L|1|BA|G|399
6C5L|1|BA|G|400
6C5L|1|BA|A|401
6C5L|1|BA|A|402
6C5L|1|BA|U|403
6C5L|1|BA|C|404
6C5L|1|BA|U|405
6C5L|1|BA|G|406
*
6C5L|1|BA|U|421
6C5L|1|BA|A|422
6C5L|1|BA|A|423
6C5L|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9