J4_6C5L_007

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C5L_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1141

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6C5L|1|BA|C|297
6C5L|1|BA|G|298
6C5L|1|BA|A|299
6C5L|1|BA|A|300
6C5L|1|BA|G|301
*
6C5L|1|BA|C|316
6C5L|1|BA|G|317
6C5L|1|BA|C|318
6C5L|1|BA|C|319
*
6C5L|1|BA|G|323
6C5L|1|BA|A|324
6C5L|1|BA|G|325
*
6C5L|1|BA|C|337
6C5L|1|BA|G|338
6C5L|1|BA|U|339
6C5L|1|BA|A|340
6C5L|1|BA|G|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24