J4_6C5L_018

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6C5L|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C5L_018 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1094

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6C5L|1|CA|G|115
6C5L|1|CA|A|116
6C5L|1|CA|G|117
6C5L|1|CA|U|118
6C5L|1|CA|A|119
6C5L|1|CA|A|120
6C5L|1|CA|C|121
6C5L|1|CA|G|122
*
6C5L|1|CA|U|239
6C5L|1|CA|C|240
*
6C5L|1|CA|G|286
6C5L|1|CA|U|287
6C5L|1|CA|A|288
6C5L|1|CA|G|289
*
6C5L|1|CA|C|311
6C5L|1|CA|C|312

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17