J4_6C5L_022
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAUAG*CAG*CGUGUCC*GUCC
- Length
- 20 nucleotides
- Bulged bases
- 6C5L|1|CW|U|8, 6C5L|1|CW|U|47, 6C5L|1|CW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6C5L_022 not in the Motif Atlas
- Homologous match to J4_6GSK_031
- Geometric discrepancy: 0.5399
- The information below is about J4_6GSK_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_13620.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6C5L|1|CW|G|5
6C5L|1|CW|G|6
6C5L|1|CW|A|7
6C5L|1|CW|U|8
6C5L|1|CW|A|9
6C5L|1|CW|G|10
*
6C5L|1|CW|C|25
6C5L|1|CW|A|26
6C5L|1|CW|G|27
*
6C5L|1|CW|C|43
6C5L|1|CW|G|44
6C5L|1|CW|U|45
6C5L|1|CW|G|46
6C5L|1|CW|U|47
6C5L|1|CW|C|48
6C5L|1|CW|C|49
*
6C5L|1|CW|G|65
6C5L|1|CW|U|66
6C5L|1|CW|C|67
6C5L|1|CW|C|68
Current chains
- Chain CW
- E-site tRNA PHE OR P-site tRNA PHE (unmodified bases)
Nearby chains
- Chain CG
- 30S ribosomal protein S7
- Chain CK
- 30S ribosomal protein S11
- Chain D6
- 50S ribosomal protein L33
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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