J4_6C5L_027

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6C5L|1|DA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C5L_027 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0987

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|DA|G|1310
6C5L|1|DA|G|1311
6C5L|1|DA|U|1312
6C5L|1|DA|U|1313
6C5L|1|DA|C|1314
*
6C5L|1|DA|G|1338
6C5L|1|DA|G|1339
6C5L|1|DA|U|1340
6C5L|1|DA|U|1341
6C5L|1|DA|A|1342
6C5L|1|DA|G|1343
*
6C5L|1|DA|C|1404
6C5L|1|DA|U|1405
*
6C5L|1|DA|A|1597
6C5L|1|DA|C|1598
6C5L|1|DA|C|1599
6C5L|1|DA|C|1600
6C5L|1|DA|G|1601
6C5L|1|DA|U|1602
6C5L|1|DA|A|1603
6C5L|1|DA|C|1604

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23