J4_6C5L_029

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6C5L|1|DA|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C5L_029 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1646

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6C5L|1|DA|G|1444
6C5L|1|DA|A|1445
6C5L|1|DA|C|1445|||A
*
6C5L|1|DA|G|1466
6C5L|1|DA|C|1467
*
6C5L|1|DA|G|1525
6C5L|1|DA|G|1526
*
6C5L|1|DA|C|1546
6C5L|1|DA|C|1547

Current chains

Chain DA

23S rRNA

Nearby chains