3D structure

PDB id
6CAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGUUC*GGUUAG*CU*ACCCGUAC
Length
21 nucleotides
Bulged bases
6CAE|1|2A|U|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6CAE_020 not in the Motif Atlas
Homologous match to J4_9DFE_004
Geometric discrepancy: 0.0504
The information below is about J4_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6CAE|1|2A|G|1310
6CAE|1|2A|G|1311
6CAE|1|2A|U|1312
6CAE|1|2A|U|1313
6CAE|1|2A|C|1314
*
6CAE|1|2A|G|1338
6CAE|1|2A|G|1339
6CAE|1|2A|U|1340
6CAE|1|2A|U|1341
6CAE|1|2A|A|1342
6CAE|1|2A|G|1343
*
6CAE|1|2A|C|1404
6CAE|1|2A|U|1405
*
6CAE|1|2A|A|1597
6CAE|1|2A|C|1598
6CAE|1|2A|C|1599
6CAE|1|2A|C|1600
6CAE|1|2A|G|1601
6CAE|1|2A|U|1602
6CAE|1|2A|A|1603
6CAE|1|2A|C|1604

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2X
50S ribosomal protein L23

Coloring options:


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