J4_6CFK_001

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6CFK|1|1A|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0563

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6CFK|1|1A|C|257
6CFK|1|1A|U|258
*
6CFK|1|1A|G|397
6CFK|1|1A|A|398
6CFK|1|1A|G|399
6CFK|1|1A|U|400
6CFK|1|1A|A|401
6CFK|1|1A|C|402
*
6CFK|1|1A|G|426
6CFK|1|1A|G|427
6CFK|1|1A|A|428
6CFK|1|1A|A|429
6CFK|1|1A|U|430
6CFK|1|1A|C|431
6CFK|1|1A|U|432
6CFK|1|1A|G|433
*
6CFK|1|1A|U|448
6CFK|1|1A|A|449
6CFK|1|1A|A|450
6CFK|1|1A|G|451

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9