J4_6CFK_006

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6CFK|1|1A|A|1491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_006 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.0905

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6CFK|1|1A|G|1490
6CFK|1|1A|A|1491
6CFK|1|1A|C|1492
*
6CFK|1|1A|G|1513
6CFK|1|1A|C|1514
*
6CFK|1|1A|G|1571
6CFK|1|1A|G|1572
*
6CFK|1|1A|C|1593
6CFK|1|1A|C|1594

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains