J4_6CFK_024

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6CFK|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_024 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0549

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6CFK|1|2a|G|115
6CFK|1|2a|A|116
6CFK|1|2a|G|117
6CFK|1|2a|U|118
6CFK|1|2a|A|119
6CFK|1|2a|A|120
6CFK|1|2a|C|121
6CFK|1|2a|G|122
*
6CFK|1|2a|U|239
6CFK|1|2a|C|240
*
6CFK|1|2a|G|286
6CFK|1|2a|U|287
6CFK|1|2a|A|288
6CFK|1|2a|G|289
*
6CFK|1|2a|C|311
6CFK|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17