J4_6CFL_001

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6CFL|1|1A|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFL_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0576

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6CFL|1|1A|C|257
6CFL|1|1A|U|258
*
6CFL|1|1A|G|397
6CFL|1|1A|A|398
6CFL|1|1A|G|399
6CFL|1|1A|U|400
6CFL|1|1A|A|401
6CFL|1|1A|C|402
*
6CFL|1|1A|G|426
6CFL|1|1A|G|427
6CFL|1|1A|A|428
6CFL|1|1A|A|429
6CFL|1|1A|U|430
6CFL|1|1A|C|431
6CFL|1|1A|U|432
6CFL|1|1A|G|433
*
6CFL|1|1A|U|448
6CFL|1|1A|A|449
6CFL|1|1A|A|450
6CFL|1|1A|G|451

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9