J4_6CFL_004

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6CFL|1|1A|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFL_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0588

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CFL|1|1A|G|1356
6CFL|1|1A|G|1357
6CFL|1|1A|U|1358
6CFL|1|1A|U|1359
6CFL|1|1A|C|1360
*
6CFL|1|1A|G|1384
6CFL|1|1A|G|1385
6CFL|1|1A|U|1386
6CFL|1|1A|U|1387
6CFL|1|1A|A|1388
6CFL|1|1A|G|1389
*
6CFL|1|1A|C|1450
6CFL|1|1A|U|1451
*
6CFL|1|1A|A|1643
6CFL|1|1A|C|1644
6CFL|1|1A|C|1645
6CFL|1|1A|C|1646
6CFL|1|1A|G|1647
6CFL|1|1A|U|1648
6CFL|1|1A|A|1649
6CFL|1|1A|C|1650

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23