3D structure

PDB id
6CFL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CU*GAGUAC*GGAAUCUG*UAAG
Length
20 nucleotides
Bulged bases
6CFL|1|2A|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6CFL_014 not in the Motif Atlas
Homologous match to J4_9DFE_001
Geometric discrepancy: 0.0692
The information below is about J4_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6CFL|1|2A|C|268
6CFL|1|2A|U|269
*
6CFL|1|2A|G|370
6CFL|1|2A|A|371
6CFL|1|2A|G|372
6CFL|1|2A|U|373
6CFL|1|2A|A|374
6CFL|1|2A|C|375
*
6CFL|1|2A|G|399
6CFL|1|2A|G|400
6CFL|1|2A|A|401
6CFL|1|2A|A|402
6CFL|1|2A|U|403
6CFL|1|2A|C|404
6CFL|1|2A|U|405
6CFL|1|2A|G|406
*
6CFL|1|2A|U|421
6CFL|1|2A|A|422
6CFL|1|2A|A|423
6CFL|1|2A|G|424

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L28
Chain 2I
50S ribosomal protein L9

Coloring options:


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