J4_6CFL_017

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6CFL|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFL_017 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.07

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CFL|1|2A|G|1310
6CFL|1|2A|G|1311
6CFL|1|2A|U|1312
6CFL|1|2A|U|1313
6CFL|1|2A|C|1314
*
6CFL|1|2A|G|1338
6CFL|1|2A|G|1339
6CFL|1|2A|U|1340
6CFL|1|2A|U|1341
6CFL|1|2A|A|1342
6CFL|1|2A|G|1343
*
6CFL|1|2A|C|1404
6CFL|1|2A|U|1405
*
6CFL|1|2A|A|1597
6CFL|1|2A|C|1598
6CFL|1|2A|C|1599
6CFL|1|2A|C|1600
6CFL|1|2A|G|1601
6CFL|1|2A|U|1602
6CFL|1|2A|A|1603
6CFL|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23