J4_6CU1_001

3D structure

PDB id

6CU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray structure of the S. typhimurium YrlA effector-binding module

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGUUG*UC*GUAG*CG

Length

14 nucleotides

Bulged bases

6CU1|1|A|U|18, 6CU1|1|A|U|19, 6CU1|1|A|U|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

6CU1|1|A|U|15
6CU1|1|A|U|16
6CU1|1|A|G|17
6CU1|1|A|U|18
6CU1|1|A|U|19
6CU1|1|A|G|20
*
6CU1|1|A|U|36
6CU1|1|A|C|37
*
6CU1|1|A|G|52
6CU1|1|A|U|53
6CU1|1|A|A|54
6CU1|1|A|G|55
*
6CU1|1|A|C|69
6CU1|1|A|G|70

Current chains

Chain A

YrlA effector-binding module

Nearby chains