J4_6CZR_001

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6CZR|1|1A|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CZR_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1085

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6CZR|1|1A|C|256
6CZR|1|1A|U|257
*
6CZR|1|1A|G|396
6CZR|1|1A|A|397
6CZR|1|1A|G|398
6CZR|1|1A|U|399
6CZR|1|1A|A|400
6CZR|1|1A|C|401
*
6CZR|1|1A|G|425
6CZR|1|1A|G|426
6CZR|1|1A|A|427
6CZR|1|1A|A|428
6CZR|1|1A|U|429
6CZR|1|1A|C|430
6CZR|1|1A|U|431
6CZR|1|1A|G|432
*
6CZR|1|1A|U|447
6CZR|1|1A|A|448
6CZR|1|1A|A|449
6CZR|1|1A|G|450

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9