3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
GGGC*GAC*GGAAG*CGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6CZR_010 not in the Motif Atlas
Homologous match to J4_9DFE_010
Geometric discrepancy: 0.1148
The information below is about J4_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6CZR|1|1A|G|2654
6CZR|1|1A|G|2655
6CZR|1|1A|G|2656
6CZR|1|1A|C|2657
*
6CZR|1|1A|G|2685
6CZR|1|1A|A|2686
6CZR|1|1A|C|2687
*
6CZR|1|1A|G|2743
6CZR|1|1A|G|2744
6CZR|1|1A|A|2745
6CZR|1|1A|A|2746
6CZR|1|1A|G|2747
*
6CZR|1|1A|C|2781
6CZR|1|1A|G|2782
6CZR|1|1A|C|2783

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1N
50S ribosomal protein L13
Chain 1O
50S ribosomal protein L14

Coloring options:


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