3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
6CZR|1|1a|G|560, 6CZR|1|1a|A|799
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.5
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6CZR|1|1a|G|559
6CZR|1|1a|G|560
6CZR|1|1a|G|561
*
6CZR|1|1a|C|748
6CZR|1|1a|G|749
6CZR|1|1a|A|750
6CZR|1|1a|A|751
6CZR|1|1a|A|752
6CZR|1|1a|G|753
*
6CZR|1|1a|C|794
6CZR|1|1a|C|795
6CZR|1|1a|C|796
6CZR|1|1a|U|797
6CZR|1|1a|A|798
6CZR|1|1a|A|799
6CZR|1|1a|A|800
6CZR|1|1a|C|801
6CZR|1|1a|G|802
6CZR|1|1a|A|803
6CZR|1|1a|U|804
6CZR|1|1a|G|805
*
6CZR|1|1a|C|857
6CZR|1|1a|C|858

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1h
30S ribosomal protein S8
Chain 1l
30S ribosomal protein S12
Chain 1o
30S ribosomal protein S15
Chain 1q
30S ribosomal protein S17

Coloring options:

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