Motif J4_61885.5 Version J4_61885.5 of this group appears in releases 3.95 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4		5		6		7		8	break		9		10		11		12		13		14		15		16		17		18		19	break		20		21	1-21	2-3	5-12	7-10	8-9	11-12	19-20
1	J4_8P9A_022	8P9A	0.1122	2	sR	SSU rRNA	A	622	G	624	*	C	975	G	976	A	977	A	978	A	979	G	980	*	C	1021	C	1022	A	1023	U	1024	A	1025	A	1027	C	1028	U	1029	A	1030	U	1031	G	1032	*	U	1103	U	1104	cWW	cWW	tHW	ncWW	cWW		cWW
2	J4_8CRE_022	8CRE	0.1108	2	CM	SSU rRNA	A	620	G	622	*	C	960	G	961	A	962	A	963	A	964	G	965	*	C	1006	C	1007	A	1008	U	1009	A	1010	A	1012	C	1013	U	1014	A	1015	U	1016	G	1017	*	U	1088	U	1089	cWW	cWW	tHW	ncWW	cWW		cWW
3	J4_5J7L_003	5J7L	0.0000	2	AA	SSU rRNA	G	575	G	577	*	C	764	G	765	A	766	A	767	A	768	G	769	*	C	810	C	811	G	812	U	813	A	814	A	816	C	817	G	818	A	819	U	820	G	821	*	C	879	C	880	cWW	cWW	tHW	ncWW	cWW	ncSH	cWW
4	J4_4LFB_003	4LFB	0.0853	2	A	SSU rRNA	G	575	G	577	*	C	764	G	765	A	766	A	767	A	768	G	769	*	C	810	C	811	C	812	U	813	A	814	A	816	C	817	G	818	A	819	U	820	G	821	*	C	879	C	880	cWW	cWW	tHW	ncWW	cWW		cWW
5	J4_6CZR_013	6CZR	0.1092	2	1a	SSU rRNA	G	559	G	561	*	C	748	G	749	A	750	A	751	A	752	G	753	*	C	794	C	795	C	796	U	797	A	798	A	800	C	801	G	802	A	803	U	804	G	805	*	C	857	C	858	cWW	cWW	ntHW		cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AAGCGAAAGCCAUAAACUAUG*UU	2
GGGCGAAAGCCCUAAACGAUG*CC	2
GCGCGAAAGCCGUAAACGAUG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGAAACAUAAACUAU*	2
GGAAACCUAAACGAU*	2
CGAAACGUAAACGAU*	1

Release history

Release	3.95
Date	2025-03-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Heat map statistics: Min 0.05 | Avg 0.09 | Max 0.15

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Coloring options: Nucleotide numbers

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