J4_6CZR_016

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6CZR|1|2A|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CZR_016 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1061

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CZR|1|2A|G|1355
6CZR|1|2A|G|1356
6CZR|1|2A|U|1357
6CZR|1|2A|U|1358
6CZR|1|2A|C|1359
*
6CZR|1|2A|G|1383
6CZR|1|2A|G|1384
6CZR|1|2A|U|1385
6CZR|1|2A|U|1386
6CZR|1|2A|A|1387
6CZR|1|2A|G|1388
*
6CZR|1|2A|C|1449
6CZR|1|2A|U|1450
*
6CZR|1|2A|A|1642
6CZR|1|2A|C|1643
6CZR|1|2A|C|1644
6CZR|1|2A|C|1645
6CZR|1|2A|G|1646
6CZR|1|2A|U|1647
6CZR|1|2A|A|1648
6CZR|1|2A|C|1649

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23