J4_6CZR_023

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6CZR|1|2a|C|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CZR_023 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.1118

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6CZR|1|2a|G|109
6CZR|1|2a|A|110
6CZR|1|2a|G|111
6CZR|1|2a|U|112
6CZR|1|2a|A|113
6CZR|1|2a|A|114
6CZR|1|2a|C|115
6CZR|1|2a|G|116
*
6CZR|1|2a|U|235
6CZR|1|2a|C|236
*
6CZR|1|2a|G|282
6CZR|1|2a|U|283
6CZR|1|2a|A|284
6CZR|1|2a|G|285
*
6CZR|1|2a|C|307
6CZR|1|2a|C|308

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17