J4_6D90_001

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

6D90|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6D90_001 not in the Motif Atlas

Homologous match to J4_8C3A_021

Geometric discrepancy: 0.1651

The information below is about J4_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78231.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6D90|1|2|C|98
6D90|1|2|A|99
6D90|1|2|U|100
6D90|1|2|U|101
6D90|1|2|A|102
6D90|1|2|A|103
6D90|1|2|A|104
6D90|1|2|U|105
6D90|1|2|C|106
*
6D90|1|2|G|355
6D90|1|2|C|356
6D90|1|2|C|357
*
6D90|1|2|G|405
6D90|1|2|U|406
6D90|1|2|G|407
6D90|1|2|A|408
6D90|1|2|C|409
*
6D90|1|2|G|431
6D90|1|2|G|432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain JJ

eS8

Chain MM

uS17

Chain YY

uS12