J4_6D90_003

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6D90|1|5|C|216, 6D90|1|5|C|217, 6D90|1|5|A|218, 6D90|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|C|196
6D90|1|5|A|197
6D90|1|5|A|198
6D90|1|5|G|199
*
6D90|1|5|C|215
6D90|1|5|C|216
6D90|1|5|C|217
6D90|1|5|A|218
6D90|1|5|G|219
6D90|1|5|C|220
6D90|1|5|C|221
6D90|1|5|C|222
*
6D90|1|5|G|226
6D90|1|5|A|227
6D90|1|5|C|228
*
6D90|1|5|G|240
6D90|1|5|G|241
6D90|1|5|U|242
6D90|1|5|A|243
6D90|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Y

uL24