J4_6D90_005

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAUAU*AGG*CAUGUUG*CAGC

Length

22 nucleotides

Bulged bases

6D90|1|5|A|2366, 6D90|1|5|U|2369, 6D90|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|G|2364
6D90|1|5|C|2365
6D90|1|5|A|2366
6D90|1|5|A|2367
6D90|1|5|A|2368
6D90|1|5|U|2369
6D90|1|5|A|2370
6D90|1|5|U|2371
*
6D90|1|5|A|2389
6D90|1|5|G|2390
6D90|1|5|G|2391
*
6D90|1|5|C|2824
6D90|1|5|A|2825
6D90|1|5|U|2826
6D90|1|5|G|2827
6D90|1|5|U|2828
6D90|1|5|U|2829
6D90|1|5|G|2830
*
6D90|1|5|C|3855
6D90|1|5|A|3856
6D90|1|5|G|3857
6D90|1|5|C|3858

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31