J4_6D90_014
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGACC*GAGGGAGCGAGACCCGUGCGCCGCGCUCUCC*GCCGGGC*GGCCACGCGUCCCCCGCGAGCGCACGGGGUCGG
- Length
- 76 nucleotides
- Bulged bases
- 6D90|1|5|G|959, 6D90|1|5|A|966, 6D90|1|5|C|967, 6D90|1|5|G|971|||A, 6D90|1|5|C|1237, 6D90|1|5|G|1246, 6D90|1|5|U|1247, 6D90|1|5|C|1252, 6D90|1|5|G|1271, 6D90|1|5|C|1272, 6D90|1|5|C|1280, 6D90|1|5|G|1287
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|5|C|709
6D90|1|5|G|710
6D90|1|5|A|711
6D90|1|5|C|712
6D90|1|5|C|713
*
6D90|1|5|G|955
6D90|1|5|A|956
6D90|1|5|G|957
6D90|1|5|G|958
6D90|1|5|G|959
6D90|1|5|A|960
6D90|1|5|G|961
6D90|1|5|C|962
6D90|1|5|G|963
6D90|1|5|A|964
6D90|1|5|G|965
6D90|1|5|A|966
6D90|1|5|C|967
6D90|1|5|C|968
6D90|1|5|C|969
6D90|1|5|G|970
6D90|1|5|U|971
6D90|1|5|G|971|||A
6D90|1|5|C|972
6D90|1|5|G|973
6D90|1|5|C|974
6D90|1|5|C|975
6D90|1|5|G|976
6D90|1|5|C|977
6D90|1|5|G|978
6D90|1|5|C|979
6D90|1|5|U|980
6D90|1|5|C|981
6D90|1|5|U|982
6D90|1|5|C|983
6D90|1|5|C|984
*
6D90|1|5|G|1070
6D90|1|5|C|1071
6D90|1|5|C|1072
6D90|1|5|G|1073
6D90|1|5|G|1074
6D90|1|5|G|1075
6D90|1|5|C|1076
*
6D90|1|5|G|1234
6D90|1|5|G|1235
6D90|1|5|C|1236
6D90|1|5|C|1237
6D90|1|5|A|1238
6D90|1|5|C|1239
6D90|1|5|G|1244
6D90|1|5|C|1245
6D90|1|5|G|1246
6D90|1|5|U|1247
6D90|1|5|C|1248
6D90|1|5|C|1249
6D90|1|5|C|1250
6D90|1|5|C|1251
6D90|1|5|C|1252
6D90|1|5|G|1271
6D90|1|5|C|1272
6D90|1|5|G|1273
6D90|1|5|A|1274
6D90|1|5|G|1275
6D90|1|5|C|1276
6D90|1|5|G|1277
6D90|1|5|C|1278
6D90|1|5|A|1279
6D90|1|5|C|1280
6D90|1|5|G|1281
6D90|1|5|G|1282
6D90|1|5|G|1283
6D90|1|5|G|1284
6D90|1|5|U|1285
6D90|1|5|C|1286
6D90|1|5|G|1287
6D90|1|5|G|1288
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain E
- eL6
- Chain F
- uL30
- Chain b
- eL29
- Chain e
- eL32
- Chain f
- eL33
Coloring options: