J4_6D90_017
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAUG*CAGUG*CGACCGAUC*GGGAGAGGGUGUAAAU
- Length
- 35 nucleotides
- Bulged bases
- 6D90|1|5|U|2763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|5|A|2551
6D90|1|5|G|2552
6D90|1|5|A|2553
6D90|1|5|U|2554
6D90|1|5|G|2555
*
6D90|1|5|C|2572
6D90|1|5|A|2573
6D90|1|5|G|2574
6D90|1|5|U|2575
6D90|1|5|G|2576
*
6D90|1|5|C|2585
6D90|1|5|G|2586
6D90|1|5|A|2587
6D90|1|5|C|2588
6D90|1|5|C|2589
6D90|1|5|G|2590
6D90|1|5|A|2591
6D90|1|5|U|2592
6D90|1|5|C|2593
*
6D90|1|5|G|2752
6D90|1|5|G|2753
6D90|1|5|G|2754
6D90|1|5|A|2755
6D90|1|5|G|2756
6D90|1|5|A|2757
6D90|1|5|G|2758
6D90|1|5|G|2759
6D90|1|5|G|2760
6D90|1|5|U|2761
6D90|1|5|G|2762
6D90|1|5|U|2763
6D90|1|5|A|2764
6D90|1|5|A|2765
6D90|1|5|A|2766
6D90|1|5|U|2767
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain Z
- eL27
- Chain g
- eL34
Coloring options: