J4_6D9J_002

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUCG*CAAAGCGG*CUAAG

Length

21 nucleotides

Bulged bases

6D9J|1|5|G|280, 6D9J|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|111
6D9J|1|5|C|112
*
6D9J|1|5|G|278
6D9J|1|5|A|279
6D9J|1|5|G|280
6D9J|1|5|U|281
6D9J|1|5|C|282
6D9J|1|5|G|283
*
6D9J|1|5|C|304
6D9J|1|5|A|305
6D9J|1|5|A|306
6D9J|1|5|A|307
6D9J|1|5|G|308
6D9J|1|5|C|309
6D9J|1|5|G|310
6D9J|1|5|G|311
*
6D9J|1|5|C|326
6D9J|1|5|U|327
6D9J|1|5|A|328
6D9J|1|5|A|329
6D9J|1|5|G|330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain N

eL15

Chain h

eL35

Chain i

eL36