J4_6D9J_003

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6D9J|1|5|C|216, 6D9J|1|5|C|217, 6D9J|1|5|A|218, 6D9J|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|196
6D9J|1|5|A|197
6D9J|1|5|A|198
6D9J|1|5|G|199
*
6D9J|1|5|C|215
6D9J|1|5|C|216
6D9J|1|5|C|217
6D9J|1|5|A|218
6D9J|1|5|G|219
6D9J|1|5|C|220
6D9J|1|5|C|221
6D9J|1|5|C|222
*
6D9J|1|5|G|226
6D9J|1|5|A|227
6D9J|1|5|C|228
*
6D9J|1|5|G|240
6D9J|1|5|G|241
6D9J|1|5|U|242
6D9J|1|5|A|243
6D9J|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Y

uL24