J4_6D9J_005

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6D9J|1|5|A|2366, 6D9J|1|5|U|2369, 6D9J|1|5|U|2828

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6D9J_005 not in the Motif Atlas

Homologous match to J4_8GLP_004

Geometric discrepancy: 0.2663

The information below is about J4_8GLP_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|2365
6D9J|1|5|A|2366
6D9J|1|5|A|2367
6D9J|1|5|A|2368
6D9J|1|5|U|2369
6D9J|1|5|A|2370
6D9J|1|5|U|2371
*
6D9J|1|5|A|2389
6D9J|1|5|G|2390
6D9J|1|5|G|2391
*
6D9J|1|5|C|2824
6D9J|1|5|A|2825
6D9J|1|5|U|2826
6D9J|1|5|G|2827
6D9J|1|5|U|2828
6D9J|1|5|U|2829
*
6D9J|1|5|A|3856
6D9J|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31