J4_6D9J_009
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAGCCGG*UG*UGGUGCGGACCAGG*CAC
- Length
- 28 nucleotides
- Bulged bases
- 6D9J|1|5|G|3615, 6D9J|1|5|G|3620, 6D9J|1|5|G|3625
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|G|2855
6D9J|1|5|C|2856
6D9J|1|5|A|2857
6D9J|1|5|A|2858
6D9J|1|5|G|2859
6D9J|1|5|C|2860
6D9J|1|5|C|2861
6D9J|1|5|G|2862
6D9J|1|5|G|2863
*
6D9J|1|5|U|2887
6D9J|1|5|G|2888
*
6D9J|1|5|U|3613
6D9J|1|5|G|3614
6D9J|1|5|G|3615
6D9J|1|5|U|3616
6D9J|1|5|G|3617
6D9J|1|5|C|3618
6D9J|1|5|G|3619
6D9J|1|5|G|3620
6D9J|1|5|A|3621
6D9J|1|5|C|3622
6D9J|1|5|C|3623
6D9J|1|5|A|3624
6D9J|1|5|G|3625
6D9J|1|5|G|3626
*
6D9J|1|5|C|3835
6D9J|1|5|A|3836
6D9J|1|5|C|3837
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- uL3
- Chain R
- eL19
- Chain V
- uL14
- Chain W
- eL24
Coloring options: